API reference

ogstools package

Subpackages

• ogstools.feflowlib package
  • combine_material_properties()
  • component_transport()
  • convert_geometry_mesh()
  • convert_properties_mesh()
  • deactivate_cells()
  • extract_cell_boundary_conditions()
  • extract_point_boundary_conditions()
  • get_material_properties_of_CT_model()
  • get_material_properties_of_HT_model()
  • get_species()
  • get_specific_surface()
  • helpFormat
  • hydro_thermal()
  • liquid_flow()
  • points_and_cells()
  • setup_prj_file()
  • steady_state_diffusion()
  • update_geometry()
  • write_mesh_of_combined_properties()
  • write_point_boundary_conditions()
  • Submodules
    • ogstools.feflowlib.templates module
      • steady_state_diffusion()
      • liquid_flow()
      • component_transport()
      • hydro_thermal()
    • ogstools.feflowlib.tools module
      • helpFormat
      • get_specific_surface()
      • assign_bulk_ids()
      • remove_bulk_ids()
      • get_dimension()
      • extract_point_boundary_conditions()
      • write_point_boundary_conditions()
      • extract_cell_boundary_conditions()
      • get_material_properties()
      • get_material_properties_of_HT_model()
      • get_material_properties_of_CT_model()
      • get_species()
      • add_species_to_prj_file()
      • combine_material_properties()
      • write_mesh_of_combined_properties()
      • materials_in_steady_state_diffusion()
      • materials_in_liquid_flow()
      • materials_in_HT()
      • materials_in_HC()
      • RequestParams
      • setup_prj_file()
      • deactivate_cells()
• ogstools.logparser package
  • parse_file()
  • analysis_convergence_coupling_iteration()
  • analysis_simulation()
  • analysis_convergence_newton_iteration()
  • analysis_simulation_termination()
  • analysis_time_step()
  • fill_ogs_context()
  • time_step_vs_iterations()
  • ogs_regexes()
  • Submodules
    • ogstools.logparser.common_ogs_analyses module
      • pre_post_check()
      • analysis_time_step()
      • analysis_simulation()
      • analysis_convergence_newton_iteration()
      • analysis_convergence_coupling_iteration()
      • time_step_vs_iterations()
      • analysis_simulation_termination()
      • fill_ogs_context()
    • ogstools.logparser.log_parser module
      • mpi_processes()
      • parse_file()
    • ogstools.logparser.regexes module
      • Log
      • Info
      • WarningType
      • ErrorType
      • CriticalType
      • MPIProcess
      • AssemblyTime
      • TimeStep
      • Iteration
      • IterationTime
      • TimeStepStartTime
      • TimeStepOutputTime
      • TimeStepSolutionTime
      • TimeStepSolutionTimeCoupledScheme
      • TimeStepFinishedTime
      • DirichletTime
      • LinearSolverTime
      • MeshReadTime
      • SimulationExecutionTime
      • ComponentConvergenceCriterion
      • TimeStepConvergenceCriterion
      • CouplingIterationConvergence
      • GenericCodePoint
      • PhaseFieldEnergyVar
      • ErrorMessage
      • CriticalMessage
      • WarningMessage
      • ogs_regexes()
• ogstools.meshlib package
  • Surface
    • Surface.material_id
    • Surface.__init__()
    • Surface.create_raster_file()
  • Layer
    • Layer.top
    • Layer.bottom
    • Layer.material_id
    • Layer.num_subdivisions
    • Layer.create_raster()
    • Layer.dim()
    • Layer.__init__()
  • Raster
    • Raster.frame
    • Raster.resolution
    • Raster.__init__()
    • Raster.as_vtu()
  • LocationFrame
    • LocationFrame.xmin
    • LocationFrame.xmax
    • LocationFrame.ymin
    • LocationFrame.ymax
    • LocationFrame.as_gml()
    • LocationFrame.__init__()
  • Boundary
    • Boundary.dim()
  • MeshSeries
    • MeshSeries.__init__()
    • MeshSeries.hdf5
    • MeshSeries.read()
    • MeshSeries.clear()
    • MeshSeries.timesteps
    • MeshSeries.timevalues
    • MeshSeries.closest_timestep()
    • MeshSeries.closest_timevalue()
    • MeshSeries.read_closest()
    • MeshSeries.read_interp()
    • MeshSeries.values()
    • MeshSeries.aggregate()
    • MeshSeries.probe()
  • LayerSet
    • LayerSet.__init__()
    • LayerSet.bounds()
    • LayerSet.filenames()
    • LayerSet.from_pandas()
    • LayerSet.create_raster()
    • LayerSet.create_rasters()
  • difference()
  • difference_pairwise()
  • difference_matrix()
  • rect()
  • cuboid()
  • Subpackages
    • ogstools.meshlib.region package
      • to_region_prism()
      • to_region_simplified()
      • to_region_tetraeder()
      • to_region_voxel()
      • RegionSet
      • to_boundary()
      • Submodules
  • Submodules
    • ogstools.meshlib.boundary module
      • Boundary
      • Layer
      • LocationFrame
      • Raster
    • ogstools.meshlib.boundary_set module
      • BoundarySet
      • LayerSet
    • ogstools.meshlib.boundary_subset module
      • Surface
      • Gaussian2D()
    • ogstools.meshlib.data_processing module
      • difference()
      • difference_pairwise()
      • difference_matrix()
    • ogstools.meshlib.gmsh_meshing module
      • rect()
      • cuboid()
      • bhe_mesh()
    • ogstools.meshlib.mesh_series module
      • MeshSeries
    • ogstools.meshlib.refine_mesh module
      • refine()
    • ogstools.meshlib.xdmf_reader module
      • XDMFReader
• ogstools.meshplotlib package
  • plot()
  • plot_contour()
  • plot_on_top()
  • plot_probe()
  • subplot()
  • update_font_sizes()
  • label_spatial_axes()
  • clear_labels()
  • Submodules
    • ogstools.meshplotlib.animation module
      • animate()
      • save_animation()
    • ogstools.meshplotlib.core module
      • get_level_boundaries()
      • get_cmap_norm()
      • get_ticklabels()
      • add_colorbars()
      • get_projection()
      • subplot()
      • clear_labels()
      • label_spatial_axes()
      • get_combined_levels()
      • get_data_aspect()
      • update_font_sizes()
      • plot()
      • plot_probe()
    • ogstools.meshplotlib.levels module
      • nice_num()
      • nice_range()
      • adaptive_rounding()
      • compute_levels()
      • median_exponent()
    • ogstools.meshplotlib.plot_features module
      • plot_layer_boundaries()
      • plot_element_edges()
      • plot_streamlines()
      • plot_on_top()
      • plot_contour()
    • ogstools.meshplotlib.plot_setup module
      • PlotSetup
    • ogstools.meshplotlib.plot_setup_defaults module
    • ogstools.meshplotlib.utils module
      • justified_labels()
      • get_style_cycler()
• ogstools.msh2vtu package
  • my_remove_orphaned_nodes()
  • print_info()
  • find_cells_at_nodes()
  • find_connected_domain_cells()
  • msh2vtu()
  • Subpackages
    • ogstools.msh2vtu.tools package
      • Subpackages
• ogstools.physics package
  • Subpackages
    • ogstools.physics.nuclearwasteheat package
      • Submodules
• ogstools.propertylib package
  • Property
    • Property.data_name
    • Property.data_unit
    • Property.output_unit
    • Property.output_name
    • Property.mask
    • Property.func()
    • Property.mesh_dependent
    • Property.process_with_units
    • Property.cmap
    • Property.bilinear_cmap
    • Property.categoric
    • Property.type_name
    • Property.replace()
    • Property.__init__()
    • Property.from_property()
    • Property.transform()
    • Property.get_output_unit()
    • Property.difference
    • Property.is_mask()
    • Property.get_mask()
    • Property.magnitude
    • Property.mask_used()
    • Property.get_label()
  • Scalar
    • Scalar.__init__()
  • Vector
    • Vector.__getitem__()
    • Vector.magnitude
    • Vector.__init__()
  • Matrix
    • Matrix.__getitem__()
    • Matrix.magnitude
    • Matrix.trace
    • Matrix.eigenvalues
    • Matrix.eigenvectors
    • Matrix.det
    • Matrix.invariant_1
    • Matrix.invariant_2
    • Matrix.invariant_3
    • Matrix.mean
    • Matrix.hydrostatic_component
    • Matrix.deviator
    • Matrix.deviator_invariant_1
    • Matrix.deviator_invariant_2
    • Matrix.deviator_invariant_3
    • Matrix.octahedral_shear
    • Matrix.von_Mises
    • Matrix.qp_ratio
    • Matrix.__init__()
  • Submodules
    • ogstools.propertylib.custom_colormaps module
    • ogstools.propertylib.matrix module
      • Matrix
    • ogstools.propertylib.mesh_dependent module
      • depth()
      • p_fluid()
      • fluid_pressure_criterion()
      • dilatancy_critescu()
      • dilatancy_alkan()
    • ogstools.propertylib.presets module
      • get_preset()
      • get_dataframe()
    • ogstools.propertylib.property module
      • Property
      • Scalar
    • ogstools.propertylib.tensor_math module
      • identity()
      • sym_tensor_to_mat()
      • trace()
      • eigenvalues()
      • eigenvectors()
      • det()
      • frobenius_norm()
      • invariant_1()
      • invariant_2()
      • invariant_3()
      • mean()
      • effective_pressure()
      • hydrostatic_component()
      • deviator()
      • deviator_invariant_1()
      • deviator_invariant_2()
      • deviator_invariant_3()
      • octahedral_shear()
      • von_mises()
      • qp_ratio()
    • ogstools.propertylib.unit_registry module
    • ogstools.propertylib.vector module
      • vector_norm()
      • Vector
      • VectorList
• ogstools.studies package
  • Subpackages
    • ogstools.studies.convergence package
      • add_grid_spacing()
      • convergence_metrics()
      • convergence_metrics_evolution()
      • grid_convergence()
      • log_fit()
      • plot_convergence()
      • plot_convergence_errors()
      • plot_convergence_error_evolution()
      • plot_convergence_order_evolution()
      • richardson_extrapolation()
      • run_convergence_study()
      • Submodules
• ogstools.workflow package
  • jupytext_to_jupyter()
  • jupyter_to_html()
  • Submodules
    • ogstools.workflow.jupyter_conversion module
      • jupyter_to_html()
      • jupytext_to_jupyter()

Submodules

• ogstools.definitions module